Publications

2017

Mayer M, Unterseer S, Bauer E, de Leon N, Ordas B, Schön CC (2017) Is there an optimum level of diversity in utilization of genetic resources? Theor Appl Genet doi:10.1007/s00122-017-2959-4

Melchinger AE, Schopp P, Müller D, Schrag TA, Bauer E, Unterseer S, Homann L, Schipprack W, Schön CC (2017) Safeguarding our genetic resources with libraries of doubled-haploid lines. Genetics 206:1611-1619, doi.org/10.1534/genetics.115.186205

Unterseer S, Seidel MA, Bauer E, Haberer G, Hochholdinger F, Opitz N, Marcon C, Baruch K, Spannagl M, Mayer KFX, Schön CC (2017) European Flint reference sequences complement the maize pan-genome. bioRxiv; doi: doi.org/10.1101/103747

2016

Gianola D, Schon CC (2016) Cross-validation without doing cross-validation in genome-enabled prediction. G3 doi: 10.1534/g3.116.033381

Gioia T, Galinski A, Lenz H, Müller C, Lentz J, Heinz K, Briese C, Putz A, Fiorani F, Watt M, Schurr U, Nagel KA (2016) GrowScreen-PaGe, a non-invasive, high-throughput phenotyping system based on germination paper to quantify crop phenotypic diversity and plasticity of root traits under varying nutrient supply. Functional Plant Biology, http://dx.doi.org/10.1071/FP16128

Han S, Utz HF, Liu W, Schrag TA, Stange M, Würschum T, Miedaner T, Bauer E, Schön CC, Melchinger AE (2016) Choice of models for QTL mapping with multiple families and design of the training set for prediction of Fusarium resistance traits in maize. Theor Appl Genet 129:431-444,  DOI: 10.1007/s00122-015-2637-3

Hu H, Schrag TA, Peis R, Unterseer S, Schipprack W, Chen S, Lai J, Yan J, Prasanna BM, Nair SK, Chaikam V, Rotarenco V, Shatskaya OA, Zavalishina A, Scholten S, Schön CC, Melchinger AE (2016) The genetic basis of haploid induction in maize identified with a novel genome-wide association method. Genetics 202, 1267-1276; DOI: 10.1534/genetics.115.184234

Revilla P, Rodríguez V, Ordás A, Rincent R, Charcosset A, Giauffret C, Melchinger AE, Schön CC, Bauer E, Altmann T, Brunel D, Moreno-González J, Campo L, Ouzunova M, Álvarez Á, Ruiz de Galarreta JI, Laborde J, Malvar R (2016) Association mapping for cold tolerance in two large maize inbred panels. BMC Plant Biol 16:127

Unterseer S, Pophaly SD, Peis R, Westermeier P, Mayer M, Seidel MA, Haberer G, Mayer KFX, Ordas B, Pausch H, Tellier A, Bauer E, Schön CC (2016) A comprehensive study of the genomic differentiation between temperate Dent and Flint maize. Genome Biology 17:137, DOI: 10.1186/s13059-016-1009-x

Yu P, Gutjahr C, Li C, Hochholdinger F (2016) Genetic control of lateral root formation in cereals. Trends in Plant Sciences, 21: 951–961

2015

Alter S, Bader KC, Spannagl M, Wang Y, Bauer E, Schön CC, Mayer KF (2015) DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species. Database 2015:bav046, doi:10.1093/database/bav046

Foiada F, Westermeier P, Kessel B, Ouzunova M, Wimmer V, Mayer W, Presterl T, Dilger M, Kreps R, Eder J, Schön CC (2015) Improving resistance to the European corn borer: a comprehensive study in elite maize using QTL mapping and genome-wide prediction. Theor Appl Genet 128:875-891, doi: 10.1007/s00122-015-2477-1

Gianola D, de los Campos G, Toro MA, Naya H, Schön CC, Sorensen D (2015) Do molecular markers inform about pleiotropy? Genetics 201:23-29, doi: 10.1534/genetics.115.179978

Han S, Utz HF, Liu W, Schrag TA, Stange M, Würschum T, Miedaner T, Bauer E, Schön C-C, Melchinger A (2015) Choice of models for QTL mapping with multiple families and design of the training set for prediction of Fusarium resistance traits in maize. Theor Appl Genet:1-14,  DOI: 10.1007/s00122-015-2637-3

Lehermeier C, Schön CC, de los Campos G (2015) Assessment of genetic heterogeneity in structured plant populations using multivariate whole-genome regression models. Genetics 201:323-337, doi: 10.1534/genetics.115.177394

Schön CC, Simianer H (2015) Resemblance between two relatives–animal and plant breeding. Journal of Animal Breeding and Genetics 132:1-2

Schopp P, Riedelsheimer C, Utz HF, Schön CC, Melchinger AE (2015) Forecasting the accuracy of genomic prediction with different selection targets in the training and prediction set as well as truncation selection. Theor Appl Genet 128:2189-2201, doi:10. 1007/ s00122-015-2577-y

Zheng L, McMullen MD, Bauer E, Schön CC, Gierl A, Frey M (2015) Prolonged expression of the BX1 signature enzyme is associated with a recombination hotspot in the benzoxazinoid gene cluster in Zea mays. J Exp Bot 66:3917-3930, doi: 10.1093/jxb/erv192


2014

Albrecht T, Auinger H-J, Wimmer V, Ogutu J, Knaak C, Ouzunova M, Piepho H-P,  Schön C-C (2014) Genome-based prediction of maize hybrid performance across genetic groups, testers, locations, and years. Theor Appl Genet 127:1375-1386, DOI: 10.1007/s00122-014-2305-z

Carbonnel S, Gutjahr C (2014) Control of arbuscular mycorrhiza development by nutrient signals. Frontiers in Plant Science 5: 462

Gianola D, Weigel KA, Krämer N, Stella A, Schön CC (2014) Enhancing genome-enabled prediction: bagging genomic BLUP. PLoS ONE 9(4): e91693, doi:10.1371/journal.pone.0091693

Giraud H, Lehermeier C, Bauer E, Falque M, Segura V, Bauland C, Camisan C, Campo L, Meyer N, Ranc N, Schipprack W, Flament P, Melchinger AE, Menz M, Moreno-González J, Ouzunova M, Charcosset A, Schön CC, Moreau L (2014) Linkage Disequilibrium with Linkage Analysis of Multi-Line Crosses Reveals Different Multi-Allelic QTL for Hybrid Performance in the Flint and Dent Heterotic Groups of Maize. Genetics 198:1717-1734, doi:10.1534/genetics.114.169367

Gresset S, Westermeier P, Rademacher S, Ouzunova M, Presterl T, Westhoff P, Schön C-C (2014) Stable carbon isotope discrimination is under genetic control in the C4 species maize with several genomic regions influencing trait expression. Plant Physiology 164:131-143, doi: 10.1104/pp.113.224816

Lehermeier C, Krämer N, Bauer E, Bauland C, Camisan C, Campo L, Flament P, Melchinger AE, Menz M, Meyer N, Moreau L, Moreno-Gonzáles J, Ouzunova M, Pausch H, Ranc N, Schipprack W, Schönleben M, Walter H, Charcosset A, Schön C-C (2014) Usefulness of multiparental populations of maize (Zea mays L.) for genome-based prediction. Genetics 198:3-16, doi: 10.1534/genetics.114.161943

Revilla P, Rodríguez VM, Ordás A, Rincent R, Charcosset A, Giauffret C, Melchinger AE, Schön CC, Bauer E, Altmann T, Brunel D, Moreno-González J, Campo L, Ouzunova M, Laborde J, Álvarez A, Ruíz de Galarreta JI, Malvar RA (2014) Variability for cold tolerance in two large maize inbred panels adapted to European climates. Crop Science 54:1981-1991, doi: 10.2135/cropsci2013.11.0733

Rincent R, Nicolas S, Bouchet S, Altmann T, Brunel D, Revilla P, Malvar RA, Moreno-Gonzalez J, Campo L, Melchinger AE, Schipprack W, Bauer E, Schön CC, Meyer N, Ouzunova M, Dubreuil P, Giauffret C, Madur D, Combes V, Dumas F, Bauland C, Jamin P, Laborde J, Flament P, Moreau L, Charcosset A (2014) Dent and Flint maize diversity panels reveal important genetic potential for increasing biomass production. Theor Appl Genet 127:2314-2331, DOI 10.1007/s00122-014-2379-7

Technow F, Schrag TA, Schipprack W, Bauer E, Simianer H, Melchinger AE (2014) Genome properties and prospects of genomic prediction of hybrid performance in a breeding program of maize. Genetics 197:1343-1355, doi: 10.1534/genetics.114.165860

Unterseer S, Bauer E, Haberer G, Seidel M, Knaak C, Ouzunova M, Meitinger T, Strom TM, Fries R, Pausch H, Bertani C, Davassi A, Mayer KFX, Schön CC (2014) A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array. BMC Genomics 15:823, doi:10.1186/1471-2164-15-823


2013

Bauer E, Falque M, Walter H, Bauland C, Camisan C, Campo L, Meyer N, Ranc N, Rincent R, Schipprack W, Altmann T, Flament P, Melchinger AE, Menz M, Moreno-González J, Ouzunova M, Revilla P, Charcosset A, Martin OC, Schön CC (2013) Intraspecific variation of recombination rate in maize. Genome Biology 14:R103, DOI: 10.1186/gb-2013-14-9-r103

Gutjahr C, Parniske M (2013) Cell and developmental biology of arbuscular mycorrhiza symbiosis. Annual Review of Cell and Developmental Biology 29: 593-617

Lehermeier C, Wimmer V, Albrecht T, Auinger H-J, Gianola D, Schmid VJ, Schön CC (2013) Sensitivity to Prior Specification in Bayesian Genome-based Prediction Models. Statistical Applications in Genetics and Molecular Biology 12:375-391, doi: 10.1515/sagmb-2012-0042

Stange M, Schrag TA, Utz HF, Riedelsheimer C, Bauer E, Melchinger AE (2013) High-density linkage mapping of yield components and epistatic interactions in maize with doubled haploid lines from four crosses. Molecular Breeding 32:533-546, doi: 10.1007/s11032-013-9887-z

Wimmer V, Lehermeier C, Albrecht T, Auinger H-J, Wang Y, Schön CC (2013) Genome-wide prediction of traits with different genetic architecture through efficient variable selection. Genetics 195:573-587, doi:10.1534/genetics.113.150078

 
2012

Melchinger AE, Orsini E, Schön CC (2012) QTL mapping under truncation selection in homozygous lines derived from biparental crosses. Theor Appl Genet 124:543-553

Rincent R, Laloë D, Nicolas S, Altmann T, Brunel D, Revilla P, Rodriguez VM, Moreno-Gonzales J, Melchinger AE, Bauer E, Schön C-C, Meyer N, Giauffret C, Bauland C, Jamin P, Laborde J, Monod H, Flament P, Charcosset A, Moreau L (2012) Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: comparison of methods in two diverse groups of maize inbreds (Zea mays L.). Genetics 112.  doi:10.1534/genetics.112.141473

Wimmer V, Albrecht T, Auinger HJ, Schön CC (2012) synbreed: A framework for the analysis of genomic prediction data using R. Bioinformatics 28:2086-2087

Yang Y, Schön CC, Sorensen D (2012) The genetics of environmental variation of dry matter grain yield in maize. Genetics Research 94:113-119


2011

Albrecht T, Wimmer V, Auinger H-J, Erbe M, Knaak C, Ouzunova M, Simianer H, Schön CC (2011) Genome-based prediction of testcross values in maize. Theor Appl Genet 123:339-350

Ganal MW, Durstewitz G, Polley A, Berard A, Buckler ES, Charcosset A, Clarke JD, Graner EM, Hansen M, Joets J, LePaslier MC, McMullen MD, Montalent P, Rose M, Schön CC, Sun Q, Walter H, Martin OC, Falque M (2011) A large maize (Zea mays L.) SNP genotyping array: Development and germplasm genotyping, and genetic mapping to compare with the B73 Reference genome. PLoS ONE 6 e28334 doi:10.1371/journal.pone.0028334


2010


Schön CC, Dhillon BS, Utz HF, Melchinger AE (2010) High congruency of QTL positions for heterosis of grain yield in three crosses of maize. Theor Appl Genet 120:321-332

2008

Fischer S, Möhring J, Schön CC, Piepho H-P, Klein D, Schipprack W, Utz HF, Melchinger AE, Reif JC (2008) Trends in genetic variance components during 30 years of hybrid maize breeding. Plant Breeding 127:446-451

Melchinger AE, Utz HF, Schön CC (2008) Genetic expectations of QTL main and interaction effects obtained with the Triple Testcross Design and their relevance for the analysis of heterosis. Genetics 178:1745-1754

Sawers RJH, Gutjahr C, Paszkowski U (2008) Cereal mycorrhiza: An ancient symbiosis in modern agriculture. Trends in Plant Sciences 13: 93-97


2007

Melchinger AE, Utz HF, Piepho H-P, Zeng Z-B, Schön CC (2007) The role of epistasis in the manifestation of heterosis: a systems-oriented approach. Genetics 177:1815–1825


2005

Mihaljevic R, Schön CC, Utz HF, Melchinger AE (2005) Correlations and QTL correspondence between line per se and testcross performance for agronomic traits in four populations of European maize. Crop Sci. 45:114-122


2004

Melchinger AE, Utz HF, Schön CC (2004) QTL analyses of complex traits with cross validation, bootstrapping and other biometric methods. Euphytica 137:1-11

Schön CC, Utz HF, Groh S, Truberg B, Openshaw S, Melchinger AE (2004) Quantitative trait locus mapping based on resampling in a vast maize testcross experiment and its relevance to quantitative genetics for complex traits. Genetics 167:485-498


2000

Utz HF, Melchinger AE, Schön CC (2000) Bias and sampling error of the estimated proportion of genotypic variance explained by quantitative trait loci determined from experimental data in maize using cross validation and validation with independent samples. Genetics 154:1839-1849